Fig. 1

a Dendrogram of all differentially expressed transcripts clustered using the Topological Overlap Matrix dissimilarity measure. Each line of the dendrogram corresponds to a transcript. The first multi-color bar below the dendrogram shows the 50 pre-merged modules identified using the dynamic cutting method. The second multi-color bar shows the merged modules after permutation test of their eigengenes correlation (see Methods). b Correspondence of modules identified at %5 FDR (vertical axis) and 1% FDR rate (horizontal axis). Numbers in the table indicate gene counts in the intersection of the corresponding modules. Coloring of the table encodes -log (p), with p being the Fisher’s exact test p-value for the overlap of the two modules. The stronger the red color, the more significant the overlap is